If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ), 'gf_id' => 'HOM05D000733', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000733' ), 'data_identifier' => 'HOM05D000733', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000733', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '798', 'num_species' => '93' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10900' => 'bna', 'A03p02690' => 'bna', 'A03p31620' => 'bna', 'A03p48890' => 'bna', 'A04p06910' => 'bna', 'A04p27480' => 'bna', 'A05p37680' => 'bna', 'A06p22100' => 'bna', 'A09p01010' => 'bna', 'A09p45560' => 'bna', 'A10p11110' => 'bna', 'A10p18590' => 'bna', 'Aa31LG10G7520' => 'aar', 'Aa31LG3G5070' => 'aar', 'Aa31LG3G9810' => 'aar', 'Aa31LG4G13740' => 'aar', 'Aa31LG5G1180' => 'aar', 'Aa31sc52G150' => 'aar', 'Actinidia06177' => 'ach', 'Actinidia07939' => 'ach', 'Actinidia18681' => 'ach', 'Actinidia24246' => 'ach', 'Actinidia28284' => 'ach', 'Actinidia32049' => 'ach', 'Actinidia34270' => 'ach', 'Ah.01g016000' => 'amhyb', 'Ah.05g178910' => 'amhyb', 'Ah.08g210090' => 'amhyb', 'Ah.08g221720' => 'amhyb', 'Ah.15g090450' => 'amhyb', 'AL1G47620' => 'aly', 'AL3G52370' => 'aly', 'AL4G32070' => 'aly', 'AL5G22290' => 'aly', 'AL5G33130' => 'aly', 'AL6G16380' => 'aly', 'AL6G16390' => 'aly', 'AL6G33200' => 'aly', 'AL6G33990' => 'aly', 'AL6G36420' => 'aly', 'AL6G51990' => 'aly', 'AL8G28640' => 'aly', 'Aqoxy1G00686' => 'aox', 'Aqoxy2G01615' => 'aox', 'Aqoxy5G04351' => 'aox', 'Aqoxy7G00004' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7FY2VB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0BD5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JIEX2F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LEA2MW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PV2ISY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RE7MP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TM123A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XI3N3Y' => 'arhy', 'AT2G35960' => 'ath', 'AT2G35970' => 'ath', 'AT3G11660' => 'ath', 'AT3G44220' => 'ath', 'AT3G52470' => 'ath', 'AT4G01410' => 'ath', 'AT4G09590' => 'ath', 'AT5G05657' => 'ath', 'AT5G06330' => 'ath', 'AT5G22200' => 'ath', 'AT5G22870' => 'ath', 'AT5G53730' => 'ath', 'ATR0043G050' => 'atr', 'ATR0661G276' => 'atr', 'ATR0661G351' => 'atr', 'ATR0772G057' => 'atr', 'Atru.chr12.2432' => 'acertr', 'Atru.chr3.3137' => 'acertr', 'Atru.chr5.773' => 'acertr', 'AUR62001542' => 'cqu', 'AUR62004562' => 'cqu', 'AUR62005994' => 'cqu', 'AUR62006280' => 'cqu', 'AUR62020241' => 'cqu', 'AUR62024022' => 'cqu', 'AUR62037051' => 'cqu', 'AUR62041320' => 'cqu', 'BcaB01g00363' => 'bca', 'BcaB01g01188' => 'bca', 'BcaB01g02319' => 'bca', 'BcaB01g05728' => 'bca', 'BcaB01g05989' => 'bca', 'BcaB02g08568' => 'bca', 'BcaB05g22070' => 'bca', 'BcaB05g22678' => 'bca', 'BcaB05g22744' => 'bca', 'BcaB05g22745' => 'bca', 'BcaB06g25595' => 'bca', 'BcaB06g28901' => 'bca', 'BcaB08g35735' => 'bca', 'BcaB08g36449' => 'bca', 'BcaC01g02024' => 'bca', 'BcaC01g06821' => 'bca', 'BcaC02g07648' => 'bca', 'BcaC02g09255' => 'bca', 'BcaC03g13866' => 'bca', 'BcaC03g13927' => 'bca', 'BcaC03g14398' => 'bca', 'BcaC04g19557' => 'bca', 'BcaC04g20423' => 'bca', 'BcaC04g24096' => 'bca', 'BcaC05g29346' => 'bca', 'BcaC06g32918' => 'bca', 'BcaC06g32919' => 'bca', 'BcaC06g33393' => 'bca', 'BcaC07g39612' => 'bca', 'BNapus_Darmor_BZH_scaffold_145p00020' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00280' => 'bna', 'BNapus_Darmor_BZH_scaffold_38p00810' => 'bna', 'BolC1t05300H' => 'bol', 'BolC2t07143H' => 'bol', 'BolC2t07209H' => 'bol', 'BolC2t07941H' => 'bol', 'BolC3t12857H' => 'bol', 'BolC3t16135H' => 'bol', 'BolC3t19201H' => 'bol', 'BolC4t25636H' => 'bol', 'BolC4t27978H' => 'bol', 'BolC5t34291H' => 'bol', 'BolC7t45216H' => 'bol', 'BolC8t50391H' => 'bol', 'BolC9t53043H' => 'bol', 'BolC9t57252H' => 'bol', 'BolC9t58313H' => 'bol', 'BraA01t04169Z' => 'bra', 'BraA02t05644Z' => 'bra', 'BraA02t05696Z' => 'bra', 'BraA02t06155Z' => 'bra', 'BraA03t09631Z' => 'bra', 'BraA03t12338Z' => 'bra', 'BraA03t13991Z' => 'bra', 'BraA04t16391Z' => 'bra', 'BraA04t18243Z' => 'bra', 'BraA05t22564Z' => 'bra', 'BraA06t25301Z' => 'bra', 'BraA09t35772Z' => 'bra', 'BraA09t40017Z' => 'bra', 'BraA10t43204Z' => 'bra', 'BraA10t43939Z' => 'bra', 'C02p10720' => 'bna', 'C02p11360' => 'bna', 'C02p18100' => 'bna', 'C03p03090' => 'bna', 'C03p38620' => 'bna', 'C03p69420' => 'bna', 'C04p40560' => 'bna', 'C04p65000' => 'bna', 'C05p56280' => 'bna', 'C07p46990' => 'bna', 'C08p27710' => 'bna', 'C09p01100' => 'bna', 'C09p43640' => 'bna', 'C09p54440' => 'bna', 'CAN.G1174.3' => 'can', 'CAN.G1245.9' => 'can', 'CAN.G1463.2' => 'can', 'CAN.G303.22' => 'can', 'CAN.G546.58' => 'can', 'CAN.G574.26' => 'can', 'CAN.G745.43' => 'can', 'CANSAT21G1801' => 'cansat', 'CANSAT54G0024' => 'cansat', 'CANSAT56G1378' => 'cansat', 'CANSAT64G0487' => 'cansat', 'CANSAT64G0978' => 'cansat', 'CANSAT64G2923' => 'cansat', 'CARHR086210' => 'chi', 'CARHR130220' => 'chi', 'CARHR152680' => 'chi', 'CARHR162240' => 'chi', 'CARHR190690' => 'chi', 'CARHR191350' => 'chi', 'CARHR207070' => 'chi', 'CARHR250270' => 'chi', 'CARHR266860' => 'chi', 'Carub.0003s1098' => 'cru', 'Carub.0004s1771' => 'cru', 'Carub.0005s0996' => 'cru', 'Carub.0005s1886' => 'cru', 'Carub.0006s0522' => 'cru', 'Carub.0006s1993' => 'cru', 'Carub.0006s2060' => 'cru', 'Carub.0006s2061' => 'cru', 'Carub.0006s3578' => 'cru', 'Carub.0008s1403' => 'cru', 'Ca_01640_v3' => 'car', 'Ca_09049_v3' => 'car', 'Ca_09550_v3' => 'car', 'Ca_11711_v3' => 'car', 'Ca_19462_v3' => 'car', 'Ca_26488_v3' => 'car', 'Cc01_g08580' => 'ccan', 'Cc02_g00810' => 'ccan', 'Cc02_g39970' => 'ccan', 'Cc06_g06460' => 'ccan', 'CDE02G0554' => 'cde', 'CDE04G2427' => 'cde', 'CDE04G2989' => 'cde', 'CDE06G0023' => 'cde', 'CDE06G0234' => 'cde', 'CDE08G0408' => 'cde', 'CDE08G1104' => 'cde', 'Cfa003731' => 'cfa', 'Cfa009949' => 'cfa', 'Cfa015749' => 'cfa', 'Cfa016158' => 'cfa', 'Cfa016684' => 'cfa', 'Cfa016685' => 'cfa', 'Ciclev10012768m.g' => 'ccl', 'Ciclev10022226m.g' => 'ccl', 'Ciclev10022290m.g' => 'ccl', 'Ciclev10029271m.g' => 'ccl', 'Ciclev10029305m.g' => 'ccl', 'CiPaw.01G083300' => 'cil', 'CiPaw.02G045000' => 'cil', 'CiPaw.05G205300' => 'cil', 'CiPaw.06G041100' => 'cil', 'CiPaw.09G020200' => 'cil', 'CiPaw.10G016600' => 'cil', 'CiPaw.13G131100' => 'cil', 'CiPaw.13G144600' => 'cil', 'CiPaw.14G106700' => 'cil', 'ClCG01G000070' => 'cla', 'ClCG01G011600' => 'cla', 'ClCG01G014960' => 'cla', 'ClCG02G022400' => 'cla', 'ClCG09G011270' => 'cla', 'COL.COLO4_14372' => 'col', 'COL.COLO4_22660' => 'col', 'COL.COLO4_23052' => 'col', 'COL.COLO4_29591' => 'col', 'Cpa.g.sc104.47' => 'cpa', 'Cpa.g.sc3.151' => 'cpa', 'Cpa.g.sc47.9' => 'cpa', 'Cpa.g.sc5109.1' => 'cpa', 'CsaV3_1G015180' => 'csa', 'CsaV3_3G007080' => 'csa', 'CsaV3_3G037880' => 'csa', 'CsaV3_5G000110' => 'csa', 'CsaV3_6G037670' => 'csa', 'CsaV3_6G038530' => 'csa', 'CsaV3_6G041060' => 'csa', 'CsaV3_UNG232230' => 'csa', 'CSS0000525' => 'camsi', 'CSS0001561' => 'camsi', 'CSS0006237' => 'camsi', 'CSS0007112' => 'camsi', 'CSS0024330' => 'camsi', 'CSS0031720' => 'camsi', 'CSS0035712' => 'camsi', 'CSS0042598' => 'camsi', 'CSS0043169' => 'camsi', 'CSS0043396' => 'camsi', 'CSS0043535' => 'camsi', 'CSS0046063' => 'camsi', 'DCAR_006181' => 'dca', 'DCAR_008234' => 'dca', 'DCAR_008986' => 'dca', 'DCAR_010573' => 'dca', 'DCAR_012232' => 'dca', 'DCAR_013439' => 'dca', 'DCAR_016917' => 'dca', 'DCAR_016918' => 'dca', 'DCAR_020375' => 'dca', 'DCAR_020709' => 'dca', 'DCAR_020710' => 'dca', 'DCAR_020713' => 'dca', 'DCAR_022306' => 'dca', 'DCAR_022307' => 'dca', 'Dinv08136' => 'din', 'Dinv29209' => 'din', 'Dinv29388' => 'din', 'Dinv35382' => 'din', 'Duzib068G1342' => 'dzi', 'Duzib084G0655' => 'dzi', 'Duzib093G0777' => 'dzi', 'Duzib093G2006' => 'dzi', 'Duzib106G0562' => 'dzi', 'Duzib128G1046' => 'dzi', 'Duzib133G0768' => 'dzi', 'Duzib138G0210' => 'dzi', 'Duzib150G0660' => 'dzi', 'Duzib168G0760' => 'dzi', 'Duzib168G0761' => 'dzi', 'Duzib168G1538' => 'dzi', 'Duzib170G0635' => 'dzi', 'Duzib205G0499' => 'dzi', 'ECA233G2245' => 'eca', 'ECA236G3698' => 'eca', 'EL10Ac1g00183' => 'bvu', 'EL10Ac3g05173' => 'bvu', 'EL10Ac7g16315' => 'bvu', 'EL10Ac7g16804' => 'bvu', 'Eucgr.A01404' => 'egr', 'Eucgr.A02388' => 'egr', 'Eucgr.A02596' => 'egr', 'Eucgr.I02772' => 'egr', 'Eucgr.I02774' => 'egr', 'Eucgr.J00542' => 'egr', 'Eucgr.K00036' => 'egr', 'Eucgr.K02615' => 'egr', 'Eucgr.L03718' => 'egr', 'FAN01G0509' => 'fan', 'FAN02G3858' => 'fan', 'FAN03G1036' => 'fan', 'FAN03G2524' => 'fan', 'FAN05G0627' => 'fan', 'FAN05G3562' => 'fan', 'FAN06G0579' => 'fan', 'FAN06G4789' => 'fan', 'FAN10G0823' => 'fan', 'FAN10G2410' => 'fan', 'FAN10G3093' => 'fan', 'FAN14G4185' => 'fan', 'FAN19G1434' => 'fan', 'FAN23G0839' => 'fan', 'FAN26G3050' => 'fan', 'FAN26G3435' => 'fan', 'FAN28G2399' => 'fan', 'FAN28G2579' => 'fan', 'FvH4_1g09370' => 'fve', 'FvH4_6g20170' => 'fve', 'FvH4_7g17770' => 'fve', 'FvH4_7g32930' => 'fve', 'Glyma.02G197600' => 'gma', 'Glyma.03G201600' => 'gma', 'Glyma.03G261400' => 'gma', 'Glyma.04G228200' => 'gma', 'Glyma.06G136700' => 'gma', 'Glyma.07G049300' => 'gma', 'Glyma.07G178700' => 'gma', 'Glyma.10G080000' => 'gma', 'Glyma.11G179900' => 'gma', 'Glyma.12G093600' => 'gma', 'Glyma.12G187600' => 'gma', 'Glyma.13G248600' => 'gma', 'Glyma.13G313700' => 'gma', 'Glyma.15G065400' => 'gma', 'Glyma.16G017900' => 'gma', 'Glyma.19G198900' => 'gma', 'Glyma.19G260500' => 'gma', 'Gohir.A01G202000' => 'ghi', 'Gohir.A04G058600' => 'ghi', 'Gohir.A05G078632' => 'ghi', 'Gohir.A05G085600' => 'ghi', 'Gohir.A07G112500' => 'ghi', 'Gohir.A08G104800' => 'ghi', 'Gohir.A09G097900' => 'ghi', 'Gohir.A09G134901' => 'ghi', 'Gohir.A11G016600' => 'ghi', 'Gohir.A11G101200' => 'ghi', 'Gohir.A11G317100' => 'ghi', 'Gohir.A12G116900' => 'ghi', 'Gohir.D01G191900' => 'ghi', 'Gohir.D04G094800' => 'ghi', 'Gohir.D05G081400' => 'ghi', 'Gohir.D05G087600' => 'ghi', 'Gohir.D07G115900' => 'ghi', 'Gohir.D08G116500' => 'ghi', 'Gohir.D09G087700' => 'ghi', 'Gohir.D09G097700' => 'ghi', 'Gohir.D09G131500' => 'ghi', 'Gohir.D11G016400' => 'ghi', 'Gohir.D11G105800' => 'ghi', 'Gohir.D11G334700' => 'ghi', 'Gohir.D12G120460' => 'ghi', 'Gorai.001G124400' => 'gra', 'Gorai.002G235800' => 'gra', 'Gorai.004G125400' => 'gra', 'Gorai.006G114500' => 'gra', 'Gorai.006G150100' => 'gra', 'Gorai.007G017200' => 'gra', 'Gorai.007G113100' => 'gra', 'Gorai.007G365600' => 'gra', 'Gorai.008G131300' => 'gra', 'Gorai.009G083100' => 'gra', 'Gorai.009G089500' => 'gra', 'Gorai.009G397400' => 'gra', 'GSVIVG01027444001' => 'vvi', 'GSVIVG01033949001' => 'vvi', 'GSVIVG01036051001' => 'vvi', 'HanXRQChr01g0019471' => 'han', 'HanXRQChr02g0055291' => 'han', 'HanXRQChr03g0091001' => 'han', 'HanXRQChr03g0091011' => 'han', 'HanXRQChr03g0091021' => 'han', 'HanXRQChr03g0091031' => 'han', 'HanXRQChr03g0091041' => 'han', 'HanXRQChr03g0091051' => 'han', 'HanXRQChr09g0239921' => 'han', 'HanXRQChr10g0305321' => 'han', 'HanXRQChr13g0398321' => 'han', 'HanXRQChr13g0403571' => 'han', 'HanXRQChr13g0420221' => 'han', 'HanXRQChr15g0494881' => 'han', 'Haze_00299' => 'cav', 'Haze_15738' => 'cav', 'Haze_19704' => 'cav', 'Haze_19705' => 'cav', 'Haze_19706' => 'cav', 'Haze_19707' => 'cav', 'Haze_23316' => 'cav', 'Hma1.2p1_0051F.1_g029590' => 'hma', 'Hma1.2p1_0064F.1_g034720' => 'hma', 'Hma1.2p1_0064F.1_g034740' => 'hma', 'Hma1.2p1_0074F.1_g038780' => 'hma', 'Hma1.2p1_0094F.1_g047390' => 'hma', 'Hma1.2p1_0415F.1_g148180' => 'hma', 'Hma1.2p1_2492F.1_g323250' => 'hma', 'HPP92_009039' => 'vpl', 'HPP92_015045' => 'vpl', 'HPP92_015049' => 'vpl', 'HPP92_026747' => 'vpl', 'Lalb_Chr01g0017881' => 'lal', 'Lalb_Chr02g0154501' => 'lal', 'Lalb_Chr03g0028351' => 'lal', 'Lalb_Chr04g0254141' => 'lal', 'Lalb_Chr08g0239581' => 'lal', 'Lalb_Chr11g0067421' => 'lal', 'Lalb_Chr15g0076561' => 'lal', 'Lalb_Chr20g0122491' => 'lal', 'Lalb_Chr24g0393411' => 'lal', 'Lalb_Chr25g0288051' => 'lal', 'Lj1C262T6' => 'lonja', 'Lj1g0007838' => 'lja', 'Lj1g0025179' => 'lja', 'Lj1g0025921' => 'lja', 'Lj1P1028T30' => 'lonja', 'Lj1P1050T12' => 'lonja', 'Lj2P973T20' => 'lonja', 'Lj3g0011511' => 'lja', 'Lj3g0014557' => 'lja', 'Lj3g0019504' => 'lja', 'Lj3P895T20' => 'lonja', 'Lj5g0000988' => 'lja', 'Lj6g0019562' => 'lja', 'Lj9C608T0' => 'lonja', 'Lj9C608T1' => 'lonja', 'Lsat_1_v5_gn_1_65060' => 'lsa', 'Lsat_1_v5_gn_2_56001' => 'lsa', 'Lsat_1_v5_gn_3_114281' => 'lsa', 'Lsat_1_v5_gn_6_35421' => 'lsa', 'Lsat_1_v5_gn_6_41740' => 'lsa', 'Lsat_1_v5_gn_7_67421' => 'lsa', 'Lsat_1_v5_gn_9_50001' => 'lsa', 'Manes.01G043300' => 'mes', 'Manes.01G239400' => 'mes', 'Manes.04G012200' => 'mes', 'Manes.05G016100' => 'mes', 'Manes.08G032500' => 'mes', 'Manes.09G046700' => 'mes', 'Manes.11G165400' => 'mes', 'MBI01_g04540_MAGBIO' => 'mbi', 'MBI04_g27242_MAGBIO' => 'mbi', 'MBI04_g27243_MAGBIO' => 'mbi', 'MBI12_g14505_MAGBIO' => 'mbi', 'MBI12_g38750_MAGBIO' => 'mbi', 'MBI17_g39743_MAGBIO' => 'mbi', 'MD00G1128800' => 'mdo', 'MD01G1228300' => 'mdo', 'MD07G1160200' => 'mdo', 'MD07G1299200' => 'mdo', 'MD12G1038700' => 'mdo', 'MD14G1037400' => 'mdo', 'Medtr1g057420' => 'mtr', 'Medtr1g077880' => 'mtr', 'Medtr2g086790' => 'mtr', 'Medtr3g092790' => 'mtr', 'Medtr4g051880' => 'mtr', 'Medtr7g106050' => 'mtr', 'Medtr7g106080' => 'mtr', 'Medtr7g118270' => 'mtr', 'Medtr8g024250' => 'mtr', 'MELO3C005920.2' => 'cme', 'MELO3C005927.2' => 'cme', 'MELO3C009532.2' => 'cme', 'MELO3C014429.2' => 'cme', 'MELO3C014516.2' => 'cme', 'MELO3C024583.2' => 'cme', 'MELO3C025577.2' => 'cme', 'Migut.D02392' => 'egut', 'Migut.F00151' => 'egut', 'Migut.F00985' => 'egut', 'Migut.F00986' => 'egut', 'Migut.J00712' => 'egut', 'Migut.L01833' => 'egut', 'Migut.N01520' => 'egut', 'Migut.N02461' => 'egut', 'MSTRG.10403' => 'ama', 'MSTRG.12383' => 'ama', 'MSTRG.19313' => 'ama', 'MSTRG.21014' => 'ama', 'MSTRG.26601' => 'ama', 'MSTRG.26977' => 'ama', 'MSTRG.28' => 'ama', 'MSTRG.28284' => 'ama', 'MSTRG.5902' => 'ama', 'Nitab4.5_0000020g0130' => 'nta', 'Nitab4.5_0000319g0040' => 'nta', 'Nitab4.5_0000380g0150' => 'nta', 'Nitab4.5_0000549g0100' => 'nta', 'Nitab4.5_0000549g0110' => 'nta', 'Nitab4.5_0000657g0080' => 'nta', 'Nitab4.5_0000893g0080' => 'nta', 'Nitab4.5_0001287g0060' => 'nta', 'Nitab4.5_0001361g0260' => 'nta', 'Nitab4.5_0002053g0070' => 'nta', 'Nitab4.5_0003578g0010' => 'nta', 'Nitab4.5_0004249g0010' => 'nta', 'Nitab4.5_0005152g0040' => 'nta', 'Nitab4.5_0006167g0020' => 'nta', 'Nitab4.5_0010809g0030' => 'nta', 'Nn1g00451' => 'nnu', 'Nn1g09313' => 'nnu', 'Nn2g13881' => 'nnu', 'Nn2g14280' => 'nnu', 'Nn2g15154' => 'nnu', 'Nn3g18790' => 'nnu', 'Nn3g18791' => 'nnu', 'Nn3g19694' => 'nnu', 'Nn4g24344' => 'nnu', 'Nn6g34718' => 'nnu', 'Nn6g34722' => 'nnu', 'Nn6g35187' => 'nnu', 'Nn7g36227' => 'nnu', 'Oeu007919.2' => 'oeu', 'Oeu009051.1' => 'oeu', 'Oeu009052.1' => 'oeu', 'Oeu009053.1' => 'oeu', 'Oeu010905.1' => 'oeu', 'Oeu023689.1' => 'oeu', 'Oeu026365.1' => 'oeu', 'Oeu031461.1' => 'oeu', 'Oeu035583.1' => 'oeu', 'Oeu035651.1' => 'oeu', 'Oeu039622.1' => 'oeu', 'Oeu044248.1' => 'oeu', 'Oeu045040.1' => 'oeu', 'Oeu048844.1' => 'oeu', 'Oeu050406.1' => 'oeu', 'Oeu052624.1' => 'oeu', 'Oeu055533.1' => 'oeu', 'Oeu061031.1' => 'oeu', 'Os02g0100600' => 'osa', 'Os02g0538700' => 'osa', 'Os04g0416700' => 'osa', 'Os04g0685400' => 'osa', 'Os05g0367900' => 'osa', 'Os08g0102700' => 'osa', 'Os09g0532200' => 'osa', 'Os11g0157200' => 'osa', 'Os12g0159600' => 'osa', 'Peaxi162Scf00010g00344' => 'pax', 'Peaxi162Scf00211g00111' => 'pax', 'Peaxi162Scf00313g00026' => 'pax', 'Peaxi162Scf00388g00051' => 'pax', 'Peaxi162Scf00392g00045' => 'pax', 'Peaxi162Scf00755g00025' => 'pax', 'Peaxi162Scf00912g00006' => 'pax', 'PGR004G1369' => 'pgr', 'PGR004G1576' => 'pgr', 'PGR042G0236' => 'pgr', 'PGR042G3698' => 'pgr', 'PGR044G0346' => 'pgr', 'PGR044G0802' => 'pgr', 'PGR044G0844' => 'pgr', 'PGR119G0610' => 'pgr', 'PGR142G1884' => 'pgr', 'PGR142G2247' => 'pgr', 'PGR142G2559' => 'pgr', 'PGSC0003DMG400000476' => 'stu', 'PGSC0003DMG400000583' => 'stu', 'PGSC0003DMG400005898' => 'stu', 'PGSC0003DMG400011296' => 'stu', 'PGSC0003DMG400016420' => 'stu', 'PGSC0003DMG400019639' => 'stu', 'PGSC0003DMG400028151' => 'stu', 'Phvul.001G195000' => 'pvu', 'Phvul.005G120900' => 'pvu', 'Phvul.006G194400' => 'pvu', 'Phvul.007G268600' => 'pvu', 'Phvul.009G044900' => 'pvu', 'Phvul.009G258400' => 'pvu', 'Phvul.010G119800' => 'pvu', 'Phvul.011G097900' => 'pvu', 'Potri.002G180000' => 'ptr', 'Potri.005G088000' => 'ptr', 'Potri.006G204200' => 'ptr', 'Potri.009G019600' => 'ptr', 'Potri.012G006000' => 'ptr', 'Potri.014G106100' => 'ptr', 'Potri.015G002400' => 'ptr', 'Potri.016G071500' => 'ptr', 'Pp3c10_5660' => 'ppa', 'Pp3c12_2240' => 'ppa', 'Pp3c20_23440' => 'ppa', 'Pp3c3_15720' => 'ppa', 'Prupe.2G198600' => 'ppe', 'Prupe.2G319000' => 'ppe', 'Prupe.6G141400' => 'ppe', 'Prupe.7G097100' => 'ppe', 'Psat1g209680' => 'psa', 'Psat3g029600' => 'psa', 'Psat4g164120' => 'psa', 'Psat5g071880' => 'psa', 'Psat5g200280' => 'psa', 'Psat5g260200' => 'psa', 'Psat5g260240' => 'psa', 'Psat6g085680' => 'psa', 'Psat7g187200' => 'psa', 'PSO063G1903' => 'pso', 'PSO063G2950' => 'pso', 'PSO339G1688' => 'pso', 'PSO339G2761' => 'pso', 'PSO339G5167' => 'pso', 'PSO384G0008' => 'pso', 'PSO478G3050' => 'pso', 'PSO782G0836' => 'pso', 'PSO782G5231' => 'pso', 'PSO801G0405' => 'pso', 'QL01p011317' => 'qlo', 'QL01p014807' => 'qlo', 'QL07p036951' => 'qlo', 'QL08p047342' => 'qlo', 'QL09p007176' => 'qlo', 'RcHm_v2.0_Chr1g0361161' => 'rch', 'RcHm_v2.0_Chr1g0382891' => 'rch', 'RcHm_v2.0_Chr2g0095911' => 'rch', 'RcHm_v2.0_Chr3g0475681' => 'rch', 'Rhsim01G0180700' => 'rsi', 'Rhsim03G0066000' => 'rsi', 'Rhsim03G0215600' => 'rsi', 'Rhsim04G0130500' => 'rsi', 'Rhsim09G0209700' => 'rsi', 'Rhsim13G0101800' => 'rsi', 'Rhsim13G0195500' => 'rsi', 'Sabra02G0134100' => 'sbr', 'Sabra05G0072600' => 'sbr', 'Sabra06G0157300' => 'sbr', 'Sabra09G0012600' => 'sbr', 'Sabra12G0003500' => 'sbr', 'Sabra12G0008000' => 'sbr', 'Sabra14G0078300' => 'sbr', 'Sabra15G0001500' => 'sbr', 'Sabra16G0071300' => 'sbr', 'Sabra16G0073500' => 'sbr', 'SalBow1G2734' => 'sbo', 'SalBow2G1634' => 'sbo', 'SalBow3G2003' => 'sbo', 'SalBow5G0187' => 'sbo', 'SalBow5G1644' => 'sbo', 'SalBow5G1894' => 'sbo', 'SalBow6G5151' => 'sbo', 'Sc01g0002160' => 'sci', 'Sc07g0005720' => 'sci', 'Sc12g0003700' => 'sci', 'Sc12g0004820' => 'sci', 'Sc21g0004210' => 'sci', 'Sc21g0006870' => 'sci', 'Sc23g0001790' => 'sci', 'Sed0003594' => 'sed', 'Sed0005432' => 'sed', 'Sed0007603' => 'sed', 'Sed0009407' => 'sed', 'Sed0011249' => 'sed', 'Sed0013810' => 'sed', 'Sed0018184' => 'sed', 'Sed0022067' => 'sed', 'Sed0022068' => 'sed', 'Sed0025974' => 'sed', 'Sed0027968' => 'sed', 'SEGI_06709' => 'sgi', 'SEGI_14796' => 'sgi', 'SEGI_17206' => 'sgi', 'SEGI_21518' => 'sgi', 'SEGI_30252' => 'sgi', 'SEGI_30795' => 'sgi', 'SEGI_37378' => 'sgi', 'SEGI_38708' => 'sgi', 'SEGI_39149' => 'sgi', 'SGA_v2.0_scaffold184G40025' => 'sas', 'SGA_v2.0_scaffold18G08466' => 'sas', 'SGA_v2.0_scaffold22G09801' => 'sas', 'SGA_v2.0_scaffold232G43525' => 'sas', 'SGA_v2.0_scaffold31G12842' => 'sas', 'SGA_v2.0_scaffold35G14006' => 'sas', 'SGA_v2.0_scaffold42G15870' => 'sas', 'SHI12379' => 'shi', 'SMO139G0064' => 'smo', 'SMO174G0058' => 'smo', 'Solyc01g007220.4' => 'sly', 'Solyc03g081230.1' => 'sly', 'Solyc06g074040.2' => 'sly', 'Solyc10g005040.4' => 'sly', 'Solyc10g150145.1' => 'sly', 'Solyc11g066490.1' => 'sly', 'Solyc11g068890.2' => 'sly', 'Sopen01g003210' => 'spe', 'Sopen03g021960' => 'spe', 'Sopen06g030460' => 'spe', 'Sopen10g001070' => 'spe', 'Sopen10g032470' => 'spe', 'Sopen11g026240' => 'spe', 'Sopen11g027580' => 'spe', 'Sp3g09890' => 'spa', 'Sp4g18210' => 'spa', 'Sp5g09830' => 'spa', 'Sp5g17100' => 'spa', 'Sp6g01360' => 'spa', 'Sp6g15800' => 'spa', 'Sp6g22540' => 'spa', 'Sp6g23030' => 'spa', 'Sp6g36520' => 'spa', 'TAR369G0460' => 'tar', 'TAR369G0867' => 'tar', 'TAR374G0686' => 'tar', 'TAR374G1132' => 'tar', 'TAR375G0206' => 'tar', 'TAR375G0958' => 'tar', 'TAR623G0843' => 'tar', 'TAR629G1326' => 'tar', 'TAR629G1837' => 'tar', 'TAR633G0233' => 'tar', 'TAR633G1210' => 'tar', 'TAR633G1666' => 'tar', 'TAR633G1866' => 'tar', 'THA.LOC104799563' => 'tha', 'THA.LOC104799944' => 'tha', 'THA.LOC104809958' => 'tha', 'THA.LOC104810884' => 'tha', 'THA.LOC104816616' => 'tha', 'THA.LOC104824446' => 'tha', 'THA.LOC104825744' => 'tha', 'THA.LOC104827358' => 'tha', 'Thecc.01G333000' => 'tca', 'Thecc.03G208900' => 'tca', 'Thecc.05G102500' => 'tca', 'Thecc.09G275400' => 'tca', 'Thhalv10010723m.g' => 'esa', 'Thhalv10010725m.g' => 'esa', 'Thhalv10014657m.g' => 'esa', 'Thhalv10015654m.g' => 'esa', 'Thhalv10015904m.g' => 'esa', 'Thhalv10015955m.g' => 'esa', 'Thhalv10017629m.g' => 'esa', 'Thhalv10021920m.g' => 'esa', 'Thhalv10029297m.g' => 'esa', 'TPR.G18415' => 'tpr', 'TPR.G19831' => 'tpr', 'TPR.G21960' => 'tpr', 'TPR.G2796' => 'tpr', 'TPR.G35556' => 'tpr', 'TPR.G4165' => 'tpr', 'TPR.G4648' => 'tpr', 'TPR.G4748' => 'tpr', 'TWI14G0451' => 'twi', 'TWI23G0072' => 'twi', 'TWI23G0138' => 'twi', 'TWI31G0681' => 'twi', 'TWI31G1288' => 'twi', 'TWI39G1135' => 'twi', 'TWI74G1554' => 'twi', 'TWI75G0760' => 'twi', 'TWI77G0547' => 'twi', 'TWI79G0984' => 'twi', 'unitig_22.g5148' => 'ugi', 'unitig_22.g6649' => 'ugi', 'unitig_22.g6821' => 'ugi', 'unitig_26.g9146' => 'ugi', 'unitig_26.g9415' => 'ugi', 'unitig_27.g25029' => 'ugi', 'unitig_578.g16355' => 'ugi', 'unitig_8.g4733' => 'ugi', 'vmacro06443' => 'vma', 'vmacro07468' => 'vma', 'vmacro08847' => 'vma', 'vmacro10159' => 'vma', 'vmacro22784' => 'vma', 'VMungo0331G1334' => 'vmu', 'VMungo0540G2319' => 'vmu', 'VMungo1080G0005' => 'vmu', 'VMungo1127G2195' => 'vmu', 'VMungo1309G0551' => 'vmu', 'VMungo1309G1066' => 'vmu', 'VMungo1383G0886' => 'vmu', 'Zm00001eb083540' => 'zma', 'Zm00001eb198910' => 'zma', 'Zm00001eb243040' => 'zma', 'Zm00001eb259950' => 'zma', 'Zm00001eb285480' => 'zma', 'Zm00001eb319570' => 'zma', 'Zm00001eb407150' => 'zma', 'Zm00001eb422110' => 'zma', 'Zm00001eb434170' => 'zma' ) $gf_id = 'HOM05D000733' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000733' ) $data_identifier = 'HOM05D000733' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 8, 'ath' => (int) 12, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 8, 'bca' => (int) 29, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 10, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 8, 'camsi' => (int) 12, 'dca' => (int) 14, 'din' => (int) 4, 'dzi' => (int) 14, 'eca' => (int) 2, 'bvu' => (int) 4, 'egr' => (int) 9, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 14, 'cav' => (int) 7, 'hma' => (int) 7, 'vpl' => (int) 4, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 7, 'mes' => (int) 7, 'mbi' => (int) 6, 'mdo' => (int) 6, 'mtr' => (int) 9, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 15, 'nnu' => (int) 13, 'oeu' => (int) 18, 'osa' => (int) 9, 'pax' => (int) 7, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 9, 'pso' => (int) 10, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 7, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 7, 'sed' => (int) 11, 'sgi' => (int) 9, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 13, 'tha' => (int) 8, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 8, 'twi' => (int) 10, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434170' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1